Cortexa research tool·structure·bindingdb

BindingDB Get Ligands By Uniprots

Get binding affinity data for multiple proteins by UniProt IDs. Returns SMILES and affinities for all matching ligands. Use for comparing binding profiles across protein family members or paralogs.

Livelast probed 2026-04-30 23:07Z· 103msCortexa

Status

The most recent probe succeeded. Safe to call from the agent today.

Last probed: 1d ago
Last success: 1d ago
Last latency: 103ms

Schema

JSON Schema the agent (or your API call) must match.

{
  "properties": {
    "affinity_cutoff": {
      "default": 10000,
      "description": "Maximum affinity in nM (default: 10000)",
      "type": "integer"
    },
    "uniprot_ids": {
      "description": "Comma-separated UniProt IDs (e.g., P00176,P00183)",
      "type": "string"
    }
  },
  "required": [
    "uniprot_ids"
  ],
  "type": "object"
}

Examples (1)

Default BindingDB Get Ligands By Uniprots call

public-safeinput

{
  "affinity_cutoff": 1,
  "uniprot_ids": ""
}

Expected response keys: success

Anonymous-safe example. Rate-limited; no sign-in required.

Identifiers

Catalog ID: tu_BindingDB_get_ligands_by_uniprots
Tool name: BindingDB_get_ligands_by_uniprots
Added: 2026-04-30 22:47Z
Tags: tooluniverse

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