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Cortexa research tool·genomics·bioportal
BioPortal Annotate Text
Annotate biomedical text with ontology terms using BioPortal's Annotator (named entity recognition). Scans free text and identifies mentions of biomedical concepts from 900+ ontologies. Useful for extracting disease mentions, drug names, gene functions, phenotypes, and anatomical terms from clinical notes, papers, or abstracts. Example: annotate 'Melanoma is a malignant tumor of melanocytes' to find DOID:1909 (melanoma) and DOID:162 (cancer).
AvailableCortexa
Schema
JSON Schema the agent (or your API call) must match.
JSON · 26 lines · 695 chars
Examples (1)
Default BioPortal Annotate Text call
public-safeinput
JSON · 3 lines · 16 chars
Expected response keys: success
Anonymous-safe example. Rate-limited; no sign-in required.
Identifiers
- Catalog ID
- tu_BioPortal_annotate_text
- Tool name
- BioPortal_annotate_text
- Added
- 2026-04-30 22:47Z
- Tags
- tooluniverse