Cortexa research tool·genomics·chipatlas

ChIPAtlas Get Peak Data

Get download URLs for ChIP-Atlas peak-call data in BigWig, BED, or BigBed format. BigWig contains coverage scores in RPM (Reads Per Million). BED/BigBed contain peak regions with MACS2 (Model-based Analysis of ChIP-Seq) peak caller scores. Use for: downloading raw data, integrating with genome browsers (UCSC, IGV), custom analysis, visualization.

Livelast probed 2026-04-30 23:07Z· 89msCortexa

Status

The most recent probe succeeded. Safe to call from the agent today.

Last probed: 1d ago
Last success: 1d ago
Last latency: 89ms

Schema

JSON Schema the agent (or your API call) must match.

{
  "properties": {
    "experiment_id": {
      "description": "Experiment ID (SRX/ERX/DRX format, required)",
      "type": "string"
    },
    "format": {
      "default": "bigwig",
      "description": "Output format",
      "enum": [
        "bigwig",
        "bed",
        "bigbed"
      ],
      "type": "string"
    },
    "genome": {
      "default": "hg38",
      "description": "Genome assembly",
      "enum": [
        "hg38",
        "hg19",
        "mm10",
        "mm9",
        "rn6",
        "dm6",
        "dm3",
        "ce11",
        "ce10",
        "sacCer3"
      ],
      "type": "string"
    },
    "operation": {
      "default": "get_peak_data",
      "enum": [
        "get_peak_data"
      ],
      "type": "string"
    },
    "threshold": {
      "default": "05",
      "description": "Q-value threshold for BED/BigBed peak files. '05'=1e-5 (more peaks), '10'=1e-10 (moderate), '20'=1e-20 (high confidence only). Only applies to BED/BigBed formats. Default '05'.",
      "enum": [
        "05",
        "10",
        "20"
      ],
      "type": "string"
    }
  },
  "required": [
    "experiment_id"
  ],
  "type": "object"
}

Examples (1)

Default ChIPAtlas Get Peak Data call

public-safeinput

{
  "experiment_id": ""
}

Expected response keys: success

Anonymous-safe example. Rate-limited; no sign-in required.

Identifiers

Catalog ID: tu_ChIPAtlas_get_peak_data
Tool name: ChIPAtlas_get_peak_data
Added: 2026-04-30 22:47Z
Tags: tooluniverse

ChIPAtlas Get Peak Data

Livelast probed 2026-04-30 23:07Z· 89msCortexa

Schema

JSON Schema the agent (or your API call) must match.

{ "properties": { "experiment_id": { "description": "Experiment ID (SRX/ERX/DRX format, required)", "type": "string" }, "format": { "default": "bigwig", "description": "Output format", "enum": [ "bigwig", "bed", "bigbed" ], "type": "string" }, "genome": { "default": "hg38", "description": "Genome assembly", "enum": [ "hg38", "hg19", "mm10", "mm9", "rn6", "dm6", "dm3", "ce11", "ce10", "sacCer3" ], "type": "string" }, "operation": { "default": "get_peak_data", "enum": [ "get_peak_data" ], "type": "string" }, "threshold": { "default": "05", "description": "Q-value threshold for BED/BigBed peak files. '05'=1e-5 (more peaks), '10'=1e-10 (moderate), '20'=1e-20 (high confidence only). Only applies to BED/BigBed formats. Default '05'.", "enum": [ "05", "10", "20" ], "type": "string" } }, "required": [ "experiment_id" ], "type": "object" }