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Cortexa research tool·genomics·dfam
Dfam Get Annotations
Get transposable element (TE) annotations for a genomic region from Dfam. Returns all TE/repeat element hits in the specified chromosomal region including family name, type (SINE, LINE, DNA, LTR, Satellite), strand, bit score, E-value, and alignment coordinates. Useful for analyzing repeat content of a genomic locus, identifying TEs near genes, or studying TE distribution. Example: chr1:10000-50000 in hg38 returns hits including TAR1 satellites, L1MC4a LINEs, MER5B DNA transposons, MIR1 SINEs.
AvailableCortexa
Schema
JSON Schema the agent (or your API call) must match.
JSON · 30 lines · 702 chars
Examples (1)
Default Dfam Get Annotations call
public-safeinput
JSON · 6 lines · 60 chars
Expected response keys: success
Anonymous-safe example. Rate-limited; no sign-in required.
Identifiers
- Catalog ID
- tu_Dfam_get_annotations
- Tool name
- Dfam_get_annotations
- Added
- 2026-05-01 00:58Z
- Tags
- tooluniverse