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Research tool·genomics·dfam
Dfam Get Annotations
Get transposable element (TE) annotations for a genomic region from Dfam. Returns all TE/repeat element hits in the specified chromosomal region including family name, type (SINE, LINE, DNA, LTR, Satellite), strand, bit score, E-value, and alignment coordinates. Useful for analyzing repeat content of a genomic locus, identifying TEs near genes, or studying TE distribution. Example: chr1:10000-50000 in hg38 returns hits including TAR1 satellites, L1MC4a LINEs, MER5B DNA transposons, MIR1 SINEs.
AvailableCortexa
Schema
JSON Schema the agent (or your API call) must match.
View JSON schemaExpandCollapse
JSON · 30 lines · 702 chars
Examples (1)
Default Dfam Get Annotations call
Public-safe example · rate-limited
JSON input · 7 lines · 86 chars
Expected response keys: success
Identifiers
- Catalog ID
- tu_Dfam_get_annotations
- Tool name
- Dfam_get_annotations
- Added
- 2026-05-01 00:58Z
- Tags
- tooluniverse