ENCODE Search Annotations

Search ENCODE annotations including candidate cis-Regulatory Elements (cCREs), chromatin states, and imputed signals. cCREs are classified as promoter-like (PLS), proximal enhancer-like (pELS), distal enhancer-like (dELS), DNase-H3K4me3 (DNase-H3K4me3), and CTCF-only. Chromatin state annotations use ChromHMM models to segment the genome into functional states. Use this to find regulatory element annotations for specific biosamples or genome assemblies.