Cortexa research tool·genomics·epmc_annotations

EPMC Get Text Mined Annotations

Get all text-mined annotations from a biomedical article via Europe PMC. Returns gene/protein mentions, diseases, chemicals, organisms, and GO terms automatically extracted from the full text. Useful for quickly identifying which genes, drugs, or diseases are discussed in a paper. Example: pmid='33332779' (COVID-19 tocilizumab trial) returns IL-6 receptor, tocilizumab, SARS-CoV-2, etc.

Livelast probed 2026-04-30 23:07Z· 104msCortexa

Status

The most recent probe succeeded. Safe to call from the agent today.

Last probed: 1d ago
Last success: 1d ago
Last latency: 104ms

Schema

JSON Schema the agent (or your API call) must match.

{
  "properties": {
    "annotation_type": {
      "description": "Filter by annotation type. Options: 'Gene_Proteins', 'Diseases', 'Chemicals', 'Organisms', 'Gene_Ontology', 'EFO'. Leave empty for all types.",
      "type": "string"
    },
    "pmcid": {
      "description": "PubMed Central ID (e.g., 'PMC7781101'). Alternative to pmid.",
      "type": "string"
    },
    "pmid": {
      "description": "PubMed ID (e.g., '33332779'). Either pmid or pmcid is required.",
      "type": "string"
    }
  },
  "required": [],
  "type": "object"
}

Examples (1)

Default EPMC Get Text Mined Annotations call

public-safeinput

{}

Expected response keys: success

Anonymous-safe example. Rate-limited; no sign-in required.

Identifiers

Catalog ID: tu_EPMC_get_text_mined_annotations
Tool name: EPMC_get_text_mined_annotations
Added: 2026-04-30 22:47Z
Tags: tooluniverse

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