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Cortexa research tool·structure·ensembl_map

EnsemblMap Convert Coordinates

Convert genomic coordinates between human genome assemblies (e.g., GRCh37/hg19 to GRCh38/hg38 or vice versa). Essential for migrating variant positions, GWAS loci, or BED intervals between assembly versions. Uses the Ensembl REST API assembly mapping endpoint. Example: converting BRAF V600E position chr7:140453136 from GRCh37 maps to chr7:140753336 in GRCh38. Supports any species with multiple assemblies.

AvailableCortexa

Schema

JSON Schema the agent (or your API call) must match.

JSON · 36 lines · 976 chars

Examples (1)

Default EnsemblMap Convert Coordinates call

public-safeinput
JSON · 7 lines · 98 chars
Expected response keys: success

Anonymous-safe example. Rate-limited; no sign-in required.

Identifiers

Catalog ID
tu_EnsemblMap_convert_coordinates
Tool name
EnsemblMap_convert_coordinates
Added
2026-04-30 22:47Z
Tags
tooluniverse
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