Cortexa research tool·genomics·ensembl_map

EnsemblMap Translate Coordinates

Map protein or cDNA positions to genomic coordinates using Ensembl. Converts positions from transcript coordinate space (cDNA nucleotide positions) or protein coordinate space (amino acid positions) to chromosomal positions. Essential for mapping protein mutations (e.g., p53 amino acids 100-200) or transcript features to their genomic locations. Example: mapping protein positions 100-200 of ENSP00000269305 (p53) returns genomic coordinates chr17:7674931-7676071 across 3 exons.

Livelast probed 2026-05-01 01:00Z· 88msCortexa

Status

The most recent probe succeeded. Safe to call from the agent today.

Last probed: 1d ago
Last success: 1d ago
Last latency: 88ms

Schema

JSON Schema the agent (or your API call) must match.

{
  "properties": {
    "end": {
      "description": "End position in transcript/protein coordinates (1-based).",
      "type": "integer"
    },
    "ensembl_id": {
      "description": "Ensembl transcript ID (ENST*) for cDNA mapping, or Ensembl protein ID (ENSP*) for protein mapping. Examples: 'ENST00000269305' (TP53 transcript), 'ENSP00000269305' (TP53 protein).",
      "type": "string"
    },
    "start": {
      "description": "Start position in transcript/protein coordinates (1-based). For cDNA: nucleotide position. For protein: amino acid position.",
      "type": "integer"
    }
  },
  "required": [
    "ensembl_id",
    "start",
    "end"
  ],
  "type": "object"
}

Examples (1)

Default EnsemblMap Translate Coordinates call

public-safeinput

{
  "end": 1,
  "ensembl_id": "",
  "start": 1
}

Expected response keys: success

Anonymous-safe example. Rate-limited; no sign-in required.

Identifiers

Catalog ID: tu_EnsemblMap_translate_coordinates
Tool name: EnsemblMap_translate_coordinates
Added: 2026-05-01 00:58Z
Tags: tooluniverse

EnsemblMap Translate Coordinates

Livelast probed 2026-05-01 01:00Z· 88msCortexa

Schema

JSON Schema the agent (or your API call) must match.

{ "properties": { "end": { "description": "End position in transcript/protein coordinates (1-based).", "type": "integer" }, "ensembl_id": { "description": "Ensembl transcript ID (ENST*) for cDNA mapping, or Ensembl protein ID (ENSP*) for protein mapping. Examples: 'ENST00000269305' (TP53 transcript), 'ENSP00000269305' (TP53 protein).", "type": "string" }, "start": { "description": "Start position in transcript/protein coordinates (1-based). For cDNA: nucleotide position. For protein: amino acid position.", "type": "integer" } }, "required": [ "ensembl_id", "start", "end" ], "type": "object" }