GTDB Get Genome
Get comprehensive metadata for a specific genome by NCBI accession from GTDB. Returns nucleotide statistics (genome size, GC%, contig count, N50), gene-level metrics (completeness via CheckM/CheckM2, contamination, SSU/LSU counts, protein count, coding density), NCBI metadata (assembly level, BioProject, BioSample, isolation source, geographic coordinates), and taxonomic history across GTDB releases. Useful for evaluating genome quality, finding genome properties, and tracking taxonomic changes…
Overview
Get comprehensive metadata for a specific genome by NCBI accession from GTDB. Returns nucleotide statistics (genome size, GC%, contig count, N50), gene-level metrics (completeness via CheckM/CheckM2, contamination, SSU/LSU counts, protein count, coding density), NCBI metadata (assembly level, BioProject, BioSample, isolation source, geographic coordinates), and taxonomic history across GTDB releases. Useful for evaluating genome quality, finding genome properties, and tracking taxonomic changes across GTDB versions.
Schema
JSON Schema the agent (or your API call) must match.
View JSON schemaExpandCollapse
Examples (1)
Default GTDB Get Genome call
Public-safe example · rate-limited
Identifiers
- Catalog ID
- tu_GTDB_get_genome
- Tool name
- GTDB_get_genome
- Added
- 2026-04-30 22:47Z
- Tags
- tooluniverse