MSigDB Get Hallmark Geneset
Retrieve a Hallmark gene set from MSigDB. The Hallmark collection (H) contains 50 gene sets representing well-defined biological states and processes with coherent expression, distilled from multiple founder sets. These are the most commonly used gene sets for pathway analysis and GSEA. Hallmark gene set names are prefixed with 'HALLMARK_' followed by the pathway name in uppercase with underscores (e.g., HALLMARK_APOPTOSIS, HALLMARK_HYPOXIA, HALLMARK_P53_PATHWAY, HALLMARK_INFLAMMATORY_RESPONSE,…
Overview
Retrieve a Hallmark gene set from MSigDB. The Hallmark collection (H) contains 50 gene sets representing well-defined biological states and processes with coherent expression, distilled from multiple founder sets. These are the most commonly used gene sets for pathway analysis and GSEA. Hallmark gene set names are prefixed with 'HALLMARK_' followed by the pathway name in uppercase with underscores (e.g., HALLMARK_APOPTOSIS, HALLMARK_HYPOXIA, HALLMARK_P53_PATHWAY, HALLMARK_INFLAMMATORY_RESPONSE, HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION).
Status
The most recent probe succeeded. Safe to call from the agent today.
- Last probed
- 1d ago
- Last success
- 1d ago
- Last latency
- 100ms
Schema
JSON Schema the agent (or your API call) must match.
{
"properties": {
"pathway_name": {
"description": "Hallmark pathway name without the 'HALLMARK_' prefix (will be auto-prepended). Examples: 'APOPTOSIS', 'P53_PATHWAY', 'HYPOXIA', 'DNA_REPAIR', 'INFLAMMATORY_RESPONSE', 'EPITHELIAL_MESENCHYMAL_TRANSITION', 'TNFA_SIGNALING_VIA_NFKB', 'KRAS_SIGNALING_UP', 'OXIDATIVE_PHOSPHORYLATION', 'GLYCOLYSIS', 'MYC_TARGETS_V1'",
"type": "string"
}
},
"required": [
"pathway_name"
],
"type": "object"
}Examples (1)
Default MSigDB Get Hallmark Geneset call
{
"pathway_name": ""
}Anonymous-safe example. Rate-limited; no sign-in required.
Identifiers
- Catalog ID
- tu_MSigDB_get_hallmark_geneset
- Tool name
- MSigDB_get_hallmark_geneset
- Added
- 2026-04-30 22:47Z
- Tags
- tooluniverse