Cortexa research tool·genomics·monarch_new

Monarch Get Associations

Query disease-gene-phenotype associations in the Monarch Initiative knowledge graph. Find gene-phenotype, disease-phenotype, gene-disease, or gene-pathway associations. Provide a subject CURIE (entity of interest) or object CURIE, with optional category filter. Uses the /association/all endpoint. Example: subject=HGNC:11998 returns all TP53 associations including phenotypes and diseases.

Livelast probed 2026-04-30 23:07Z· 117msCortexa

Status

The most recent probe succeeded. Safe to call from the agent today.

Last probed: 1d ago
Last success: 1d ago
Last latency: 117ms

Schema

JSON Schema the agent (or your API call) must match.

{
  "properties": {
    "category": {
      "description": "Optional Biolink association category filter. Options: 'biolink:GeneToPhenotypicFeatureAssociation', 'biolink:DiseaseToPhenotypicFeatureAssociation', 'biolink:CorrelatedGeneToDiseaseAssociation', 'biolink:CausalGeneToDiseaseAssociation', 'biolink:GeneToPathwayAssociation'.",
      "type": "string"
    },
    "limit": {
      "description": "Maximum associations to return (default: 20, max: 200).",
      "type": "integer"
    },
    "object": {
      "description": "Object entity CURIE. Use instead of subject to find entities associated TO this object.",
      "type": "string"
    },
    "subject": {
      "description": "Subject entity CURIE. Examples: 'HGNC:11998' (TP53), 'MONDO:0005148' (type 2 diabetes).",
      "type": "string"
    }
  },
  "required": [],
  "type": "object"
}

Examples (1)

Default Monarch Get Associations call

public-safeinput

{
  "limit": 3
}

Expected response keys: success

Anonymous-safe example. Rate-limited; no sign-in required.

Identifiers

Catalog ID: tu_Monarch_get_associations
Tool name: Monarch_get_associations
Added: 2026-04-30 22:47Z
Tags: tooluniverse

Monarch Get Associations

Livelast probed 2026-04-30 23:07Z· 117msCortexa

Schema

JSON Schema the agent (or your API call) must match.

{ "properties": { "category": { "description": "Optional Biolink association category filter. Options: 'biolink:GeneToPhenotypicFeatureAssociation', 'biolink:DiseaseToPhenotypicFeatureAssociation', 'biolink:CorrelatedGeneToDiseaseAssociation', 'biolink:CausalGeneToDiseaseAssociation', 'biolink:GeneToPathwayAssociation'.", "type": "string" }, "limit": { "description": "Maximum associations to return (default: 20, max: 200).", "type": "integer" }, "object": { "description": "Object entity CURIE. Use instead of subject to find entities associated TO this object.", "type": "string" }, "subject": { "description": "Subject entity CURIE. Examples: 'HGNC:11998' (TP53), 'MONDO:0005148' (type 2 diabetes).", "type": "string" } }, "required": [], "type": "object" }