Cortexa research tool·chemistry·omicsdi

OmicsDI Get Dataset

Get detailed information about a specific omics dataset in OmicsDI by accession number and source database. Returns full metadata including description, protocols, instruments, organisms, tissues, diseases, publication IDs, and download links. Example accessions: 'MTBLS1355' (MetaboLights), 'GSE12345' (GEO), 'PXD000001' (PRIDE).

Livelast probed 2026-05-01 01:00Z· 772msCortexa

Status

The most recent probe succeeded. Safe to call from the agent today.

Last probed: 1d ago
Last success: 1d ago
Last latency: 772ms

Schema

JSON Schema the agent (or your API call) must match.

{
  "properties": {
    "accession": {
      "description": "Dataset accession number (e.g., 'MTBLS1355', 'E-GEOD-100000', 'PXD000001')",
      "type": "string"
    },
    "database": {
      "description": "Source database name (e.g., 'metabolights_dataset', 'arrayexpress-repository', 'pride', 'geo')",
      "type": "string"
    }
  },
  "required": [
    "accession",
    "database"
  ],
  "type": "object"
}

Examples (1)

Default OmicsDI Get Dataset call

public-safeinput

{
  "accession": "P38398",
  "database": ""
}

Expected response keys: success

Anonymous-safe example. Rate-limited; no sign-in required.

Identifiers

Catalog ID: tu_OmicsDI_get_dataset
Tool name: OmicsDI_get_dataset
Added: 2026-05-01 00:58Z
Tags: tooluniverse

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