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Cortexa research tool·structure·pdbe_validation

PDBeValidation Get Outlier Residues

Get residue-level validation outliers for a PDB structure from PDBe. Identifies specific residues with geometry problems (Ramachandran outliers, sidechain rotamer outliers, bond angle/length deviations). Returns problematic residues organized by molecule/chain. Essential for identifying unreliable regions before using structure data for molecular docking, mutation analysis, or protein engineering. Example: 4HHB has residue-level outliers in chains A-D with rotamer and Ramachandran deviations.

AvailableCortexa

Schema

JSON Schema the agent (or your API call) must match.

JSON · 12 lines · 235 chars

Examples (1)

Default PDBeValidation Get Outlier Residues call

input
JSON · 3 lines · 22 chars
Expected response keys: success

Identifiers

Catalog ID
tu_PDBeValidation_get_outlier_residues
Tool name
PDBeValidation_get_outlier_residues
Added
2026-04-30 22:47Z
Tags
tooluniverse, slow
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