PDBe KB Get Ligand Sites
Get ligand binding site residues for a UniProt protein from PDBe-KB. Returns all known ligands that bind the protein, with the specific residue positions (UniProt numbering) involved in binding, the PDB structures where binding was observed, and ligand metadata (scaffold, cofactor status, drug associations). Essential for understanding protein function, drug binding, and designing mutagenesis experiments. Example: P04637 (TP53) shows NAD binding at residue 382, zinc coordination at the DNA-bind…
Overview
Get ligand binding site residues for a UniProt protein from PDBe-KB. Returns all known ligands that bind the protein, with the specific residue positions (UniProt numbering) involved in binding, the PDB structures where binding was observed, and ligand metadata (scaffold, cofactor status, drug associations). Essential for understanding protein function, drug binding, and designing mutagenesis experiments. Example: P04637 (TP53) shows NAD binding at residue 382, zinc coordination at the DNA-binding domain.
Status
The most recent probe succeeded. Safe to call from the agent today.
- Last probed
- 1d ago
- Last success
- 1d ago
- Last latency
- 121ms
Schema
JSON Schema the agent (or your API call) must match.
{
"properties": {
"uniprot_accession": {
"description": "UniProt accession ID for the protein. Examples: 'P04637' (TP53), 'P00533' (EGFR), 'P38398' (BRCA1).",
"type": "string"
}
},
"required": [
"uniprot_accession"
],
"type": "object"
}Examples (1)
Default PDBe KB Get Ligand Sites call
{
"uniprot_accession": "P38398"
}Anonymous-safe example. Rate-limited; no sign-in required.
Identifiers
- Catalog ID
- tu_PDBe_KB_get_ligand_sites
- Tool name
- PDBe_KB_get_ligand_sites
- Added
- 2026-04-30 22:47Z
- Tags
- tooluniverse