PDBe KB Get Superposition Clusters
Get structural superposition clusters for a UniProt protein from PDBe-KB. Returns protein segments with structurally aligned PDB chains grouped into clusters based on 3D structural similarity. Each cluster has a representative structure and aligned member structures. Useful for understanding structural coverage across different conformational states, identifying the best representative structure for each domain, and comparing structural fragments from different crystal structures. Example: P046…
Overview
Get structural superposition clusters for a UniProt protein from PDBe-KB. Returns protein segments with structurally aligned PDB chains grouped into clusters based on 3D structural similarity. Each cluster has a representative structure and aligned member structures. Useful for understanding structural coverage across different conformational states, identifying the best representative structure for each domain, and comparing structural fragments from different crystal structures. Example: P04637 (TP53) shows clusters covering residues 1-93 (transactivation domain) and 94-312 (DNA-binding domain); P00533 (EGFR) has 5 segments with multiple clusters covering the extracellular and kinase domains.
Schema
JSON Schema the agent (or your API call) must match.
View JSON schemaExpandCollapse
Examples (1)
Default PDBe KB Get Superposition Clusters call
Public-safe example · rate-limited
Identifiers
- Catalog ID
- tu_PDBe_KB_get_superposition_clusters
- Tool name
- PDBe_KB_get_superposition_clusters
- Added
- 2026-04-30 22:47Z
- Tags
- tooluniverse