Cortexa research tool·genomics·popgen

PopGen Haplotype Count

Estimate distinct haplotypes after recombination across generations for a region with multiple biallelic SNPs. Reports maximum theoretical haplotypes (2^n), expected crossovers per gamete, probability of at least one recombination event, and estimated haplotype diversity based on LD decay. Useful for understanding recombination impact on genetic variation.

Livelast probed 2026-05-01 01:00Z· 116msCortexa

Status

The most recent probe succeeded. Safe to call from the agent today.

Last probed: 1d ago
Last success: 1d ago
Last latency: 116ms

Schema

JSON Schema the agent (or your API call) must match.

{
  "properties": {
    "generations": {
      "description": "Number of generations of random mating (default 1)",
      "type": "integer"
    },
    "n_snps": {
      "description": "Number of biallelic SNP loci in the region",
      "type": "integer"
    },
    "operation": {
      "description": "Operation type",
      "enum": [
        "haplotype_count"
      ],
      "type": "string"
    },
    "recomb_rate": {
      "description": "Per-adjacent-interval recombination rate [0, 1] per generation (default 0.5)",
      "type": "number"
    }
  },
  "required": [
    "operation",
    "n_snps"
  ],
  "type": "object"
}

Examples (1)

Default PopGen Haplotype Count call

public-safeinput

{
  "generations": 1,
  "n_snps": 1,
  "operation": "",
  "recomb_rate": 1
}

Expected response keys: success

Anonymous-safe example. Rate-limited; no sign-in required.

Identifiers

Catalog ID: tu_PopGen_haplotype_count
Tool name: PopGen_haplotype_count
Added: 2026-05-01 00:58Z
Tags: tooluniverse

PopGen Haplotype Count

Livelast probed 2026-05-01 01:00Z· 116msCortexa

Schema

JSON Schema the agent (or your API call) must match.

{ "properties": { "generations": { "description": "Number of generations of random mating (default 1)", "type": "integer" }, "n_snps": { "description": "Number of biallelic SNP loci in the region", "type": "integer" }, "operation": { "description": "Operation type", "enum": [ "haplotype_count" ], "type": "string" }, "recomb_rate": { "description": "Per-adjacent-interval recombination rate [0, 1] per generation (default 0.5)", "type": "number" } }, "required": [ "operation", "n_snps" ], "type": "object" }