Rfam Get Alignment

Get RNA family seed alignment in multiple formats. Returns curated multiple sequence alignment used to build covariance model. Formats: stockholm (default, with structure annotation), pfam (stockholm single-line), fasta (gapped), fastau (ungapped). Optional gzip compression for large alignments. Use for: sequence analysis, structure prediction, phylogenetic studies, homology detection. Alignments show conserved positions and base pairing.