UCSC Get Encode CCREs
Get ENCODE4 candidate cis-Regulatory Elements (cCREs) for a genomic region from UCSC Genome Browser. cCREs are classified by epigenetic signatures into: Promoter-like (PLS, red), Proximal enhancer-like (pELS, orange), Distal enhancer-like (dELS, yellow), DNase-H3K4me3 (blue), CTCF-only/CTCF-bound (green). Each cCRE includes max Z-scores for DNase, H3K4me3, H3K27ac, and CTCF signals across biosamples. Use this to identify regulatory elements in a region of interest for functional genomics or GWA…
Overview
Get ENCODE4 candidate cis-Regulatory Elements (cCREs) for a genomic region from UCSC Genome Browser. cCREs are classified by epigenetic signatures into: Promoter-like (PLS, red), Proximal enhancer-like (pELS, orange), Distal enhancer-like (dELS, yellow), DNase-H3K4me3 (blue), CTCF-only/CTCF-bound (green). Each cCRE includes max Z-scores for DNase, H3K4me3, H3K27ac, and CTCF signals across biosamples. Use this to identify regulatory elements in a region of interest for functional genomics or GWAS variant interpretation.
Schema
JSON Schema the agent (or your API call) must match.
Examples (1)
Default UCSC Get Encode CCREs call
Anonymous-safe example. Rate-limited; no sign-in required.
Identifiers
- Catalog ID
- tu_UCSC_get_encode_cCREs
- Tool name
- UCSC_get_encode_cCREs
- Added
- 2026-05-01 00:58Z
- Tags
- tooluniverse