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Cortexa research tool·genomics·epigenomics
UCSC Get Tf Binding Clusters
Get Transcription Factor ChIP-seq Clusters from ENCODE3 for a genomic region via UCSC Genome Browser. Returns clusters of TF binding sites from 340 factors across 129 cell types, aggregated from ENCODE3 ChIP-seq peak data. Each cluster shows the transcription factor name, peak score, and number of source experiments. Use this to identify which transcription factors bind to a specific genomic region, discover regulatory hotspots, or interpret GWAS variants by finding overlapping TF binding sites.
AvailableCortexa
Schema
JSON Schema the agent (or your API call) must match.
JSON · 27 lines · 526 chars
Examples (1)
Default UCSC Get Tf Binding Clusters call
public-safeinput
JSON · 5 lines · 43 chars
Expected response keys: success
Anonymous-safe example. Rate-limited; no sign-in required.
Identifiers
- Catalog ID
- tu_UCSC_get_tf_binding_clusters
- Tool name
- UCSC_get_tf_binding_clusters
- Added
- 2026-04-30 22:47Z
- Tags
- tooluniverse