Cortexa research tool·genomics·epigenomics

UCSC Get Tf Binding Clusters

Get Transcription Factor ChIP-seq Clusters from ENCODE3 for a genomic region via UCSC Genome Browser. Returns clusters of TF binding sites from 340 factors across 129 cell types, aggregated from ENCODE3 ChIP-seq peak data. Each cluster shows the transcription factor name, peak score, and number of source experiments. Use this to identify which transcription factors bind to a specific genomic region, discover regulatory hotspots, or interpret GWAS variants by finding overlapping TF binding sites.

Livelast probed 2026-04-30 23:07Z· 82msCortexa

Status

The most recent probe succeeded. Safe to call from the agent today.

Last probed: 1d ago
Last success: 1d ago
Last latency: 82ms

Schema

JSON Schema the agent (or your API call) must match.

{
  "properties": {
    "chrom": {
      "description": "Chromosome name (e.g., 'chr17').",
      "type": "string"
    },
    "end": {
      "description": "End position (0-based).",
      "type": "integer"
    },
    "genome": {
      "default": "hg38",
      "description": "Genome assembly (e.g., 'hg38', 'hg19').",
      "type": "string"
    },
    "start": {
      "description": "Start position (0-based).",
      "type": "integer"
    }
  },
  "required": [
    "chrom",
    "start",
    "end"
  ],
  "type": "object"
}

Examples (1)

Default UCSC Get Tf Binding Clusters call

public-safeinput

{
  "chrom": "",
  "end": 1,
  "start": 1
}

Expected response keys: success

Anonymous-safe example. Rate-limited; no sign-in required.

Identifiers

Catalog ID: tu_UCSC_get_tf_binding_clusters
Tool name: UCSC_get_tf_binding_clusters
Added: 2026-04-30 22:47Z
Tags: tooluniverse

UCSC Get Tf Binding Clusters

Livelast probed 2026-04-30 23:07Z· 82msCortexa

Schema

JSON Schema the agent (or your API call) must match.

{ "properties": { "chrom": { "description": "Chromosome name (e.g., 'chr17').", "type": "string" }, "end": { "description": "End position (0-based).", "type": "integer" }, "genome": { "default": "hg38", "description": "Genome assembly (e.g., 'hg38', 'hg19').", "type": "string" }, "start": { "description": "Start position (0-based).", "type": "integer" } }, "required": [ "chrom", "start", "end" ], "type": "object" }