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Cortexa research tool·genomics·epigenomics

UCSC Get Tf Binding Clusters

Get Transcription Factor ChIP-seq Clusters from ENCODE3 for a genomic region via UCSC Genome Browser. Returns clusters of TF binding sites from 340 factors across 129 cell types, aggregated from ENCODE3 ChIP-seq peak data. Each cluster shows the transcription factor name, peak score, and number of source experiments. Use this to identify which transcription factors bind to a specific genomic region, discover regulatory hotspots, or interpret GWAS variants by finding overlapping TF binding sites.

AvailableCortexa

Schema

JSON Schema the agent (or your API call) must match.

JSON · 27 lines · 526 chars

Examples (1)

Default UCSC Get Tf Binding Clusters call

public-safeinput
JSON · 5 lines · 43 chars
Expected response keys: success

Anonymous-safe example. Rate-limited; no sign-in required.

Identifiers

Catalog ID
tu_UCSC_get_tf_binding_clusters
Tool name
UCSC_get_tf_binding_clusters
Added
2026-04-30 22:47Z
Tags
tooluniverse
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