GProfiler Annotate Snps
Map SNP rsIDs to genes and annotate their functional consequences using g:Profiler (g:SNPense) from the University of Tartu. Given a list of SNP rsIDs, returns the chromosome, position, strand, associated Ensembl gene IDs, gene names, and predicted variant consequences (missense_variant, synonymous_variant, intron_variant, etc.) with counts. Useful for annotating GWAS hits, linking variants to genes, or understanding the functional impact of SNPs. Example: 'rs11540652' maps to chromosome 17 pos…
Overview
Map SNP rsIDs to genes and annotate their functional consequences using g:Profiler (g:SNPense) from the University of Tartu. Given a list of SNP rsIDs, returns the chromosome, position, strand, associated Ensembl gene IDs, gene names, and predicted variant consequences (missense_variant, synonymous_variant, intron_variant, etc.) with counts. Useful for annotating GWAS hits, linking variants to genes, or understanding the functional impact of SNPs. Example: 'rs11540652' maps to chromosome 17 position 7674220, gene TP53 (ENSG00000141510), with 18 missense variant consequences; 'rs429358' maps to APOE on chromosome 19.
Status
The most recent probe succeeded. Safe to call from the agent today.
- Last probed
- 1d ago
- Last success
- 1d ago
- Last latency
- 111ms
Schema
JSON Schema the agent (or your API call) must match.
{
"properties": {
"organism": {
"description": "Organism identifier. Default: 'hsapiens'. Examples: 'hsapiens' (human), 'mmusculus' (mouse).",
"type": "string"
},
"snp_list": {
"description": "Comma-separated list of SNP rsIDs. Examples: 'rs11540652,rs429358,rs7903146' or 'rs1042779,rs6792369'. Maximum ~200 SNPs per query.",
"type": "string"
}
},
"required": [
"snp_list"
],
"type": "object"
}Examples (1)
Default GProfiler Annotate Snps call
{
"snp_list": ""
}Anonymous-safe example. Rate-limited; no sign-in required.
Identifiers
- Catalog ID
- tu_gProfiler_annotate_snps
- Tool name
- gProfiler_annotate_snps
- Added
- 2026-04-30 22:47Z
- Tags
- tooluniverse