Humanbase Ppi Analysis

Status

The most recent probe succeeded. Safe to call from the agent today.

Last probed

1d ago

Last success

1d ago

Last latency

1263ms

Schema

JSON Schema the agent (or your API call) must match.

{
  "properties": {
    "gene_list": {
      "description": "List of gene names or symbols to analyze for protein-protein interactions. The gene name should be the official gene symbol, not the synonym.",
      "items": {
        "type": "string"
      },
      "minItems": 1,
      "type": "array"
    },
    "genes": {
      "description": "Alias for gene_list. List of gene symbols to analyze.",
      "items": {
        "type": "string"
      },
      "type": "array"
    },
    "interaction": {
      "description": "Specific interaction type to filter by. Available types: 'co-expression', 'interaction', 'tf-binding', 'gsea-microrna-targets', 'gsea-perturbations'. If not specified, all types will be included.",
      "enum": [
        "co-expression",
        "interaction",
        "tf-binding",
        "gsea-microrna-targets",
        "gsea-perturbations"
      ],
      "type": "string"
    },
    "max_node": {
      "default": 10,
      "description": "Maximum number of nodes to retrieve in the interaction network. Warning: the more nodes, the more time it takes to retrieve the data. Default is 10 (~30 seconds).",
      "maximum": 100,
      "minimum": 1,
      "type": "integer"
    },
    "string_mode": {
      "default": true,
      "description": "Whether to return the result in string mode. If True, the result will be a string of the network graph and the biological processes. If False, the result will be a NetworkX graph and a list of biological processes.",
      "type": "boolean"
    },
    "tissue": {
      "default": "brain",
      "description": "Tissue type for tissue-specific interactions. Use simple names like 'brain', 'heart', 'liver', 'kidney', 'lung', 'blood'. For v3 networks with more cell-type specificity, append '-v3' (e.g., 'brain-v3', 'liver-v3').",
      "type": "string"
    },
    "top_n": {
      "description": "Alias for max_node. Maximum number of network nodes to retrieve.",
      "maximum": 100,
      "minimum": 1,
      "type": "integer"
    }
  },
  "required": [],
  "type": "object"
}

Examples (1)

{
  "gene_list": [],
  "genes": [],
  "max_node": 1,
  "string_mode": false,
  "top_n": 1
}

Identifiers

Catalog ID

tu_humanbase_ppi_analysis

Tool name

humanbase_ppi_analysis

Added

2026-04-30 22:47Z

Tags

tooluniverse