Cortexa research tool·genomics·archs4

ARCHS4 Get Gene Expression

Get gene expression levels across human or mouse tissues and cell lines from ARCHS4 (All RNA-seq and ChIP-seq Sample and Signature Search). Returns box-plot statistics (min, Q1, median, Q3, max) in log2(TPM+1) units for each tissue/cell line, computed from 300K+ uniformly processed RNA-seq samples. Choose type='tissue' for organ/tissue expression or type='cellline' for cell line expression. Results are sorted by median expression (highest first).

Livelast probed 2026-04-30 23:07Z· 79msCortexa

Status

The most recent probe succeeded. Safe to call from the agent today.

Last probed: 1d ago
Last success: 1d ago
Last latency: 79ms

Schema

JSON Schema the agent (or your API call) must match.

{
  "properties": {
    "gene": {
      "description": "Gene symbol (e.g., TP53, BRCA1, EGFR, MYC)",
      "type": "string"
    },
    "species": {
      "default": "human",
      "description": "Species: human or mouse (default: human)",
      "enum": [
        "human",
        "mouse",
        null
      ],
      "type": [
        "string",
        "null"
      ]
    },
    "type": {
      "default": "tissue",
      "description": "Expression type: tissue (organs/tissues) or cellline (cell lines). Default: tissue",
      "enum": [
        "tissue",
        "cellline",
        null
      ],
      "type": [
        "string",
        "null"
      ]
    }
  },
  "required": [
    "gene"
  ],
  "type": "object"
}

Examples (1)

Default ARCHS4 Get Gene Expression call

public-safeinput

{
  "gene": "BRCA1"
}

Expected response keys: success

Anonymous-safe example. Rate-limited; no sign-in required.

Identifiers

Catalog ID: tu_ARCHS4_get_gene_expression
Tool name: ARCHS4_get_gene_expression
Added: 2026-04-30 22:47Z
Tags: tooluniverse

ARCHS4 Get Gene Expression

Livelast probed 2026-04-30 23:07Z· 79msCortexa

Schema

JSON Schema the agent (or your API call) must match.

{ "properties": { "gene": { "description": "Gene symbol (e.g., TP53, BRCA1, EGFR, MYC)", "type": "string" }, "species": { "default": "human", "description": "Species: human or mouse (default: human)", "enum": [ "human", "mouse", null ], "type": [ "string", "null" ] }, "type": { "default": "tissue", "description": "Expression type: tissue (organs/tissues) or cellline (cell lines). Default: tissue", "enum": [ "tissue", "cellline", null ], "type": [ "string", "null" ] } }, "required": [ "gene" ], "type": "object" }