AllenBrain Get Structure Expression Values
Get quantified per-structure gene-expression values (StructureUnionize) for one Allen Mouse Brain ISH experiment (SectionDataSet). Returns the actual numeric spatial expression aggregated over each annotated brain structure: expression_energy (intensity x density), expression_density (fraction of expressing pixels), sum_expressing_pixels, plus the structure record (acronym, name). This is the real spatial expression signal, not just experiment metadata. Get a section_data_set_id from AllenBrain…
Overview
Get quantified per-structure gene-expression values (StructureUnionize) for one Allen Mouse Brain ISH experiment (SectionDataSet). Returns the actual numeric spatial expression aggregated over each annotated brain structure: expression_energy (intensity x density), expression_density (fraction of expressing pixels), sum_expressing_pixels, plus the structure record (acronym, name). This is the real spatial expression signal, not just experiment metadata. Get a section_data_set_id from AllenBrain_get_expression_datasets. Example: section_data_set_id=75457539 (a Gad1 mouse-brain ISH dataset) returns 2406 per-structure rows.
Schema
JSON Schema the agent (or your API call) must match.
Examples (1)
Default AllenBrain Get Structure Expression Values call
Anonymous-safe example. Rate-limited; no sign-in required.
Identifiers
- Catalog ID
- tu_AllenBrain_get_structure_expression_values
- Tool name
- AllenBrain_get_structure_expression_values
- Added
- 2026-07-29 18:13Z
- Tags
- tooluniverse