AlphaFill Get Transplants
Get the ligands, cofactors, and ions that AlphaFill transplants into a protein's AlphaFold model, by UniProt accession. AlphaFold predicts apo (ligand-free) structures; AlphaFill adds small molecules by homology to experimental PDB structures. Returns the distinct transplanted compounds (PDB chemical-component codes), how many homologous hits support each, the best local fit RMSD (lower = better), and the source PDB entries. Use to hypothesize cofactor/metal/ligand/drug binding for a protein wh…
Overview
Get the ligands, cofactors, and ions that AlphaFill transplants into a protein's AlphaFold model, by UniProt accession. AlphaFold predicts apo (ligand-free) structures; AlphaFill adds small molecules by homology to experimental PDB structures. Returns the distinct transplanted compounds (PDB chemical-component codes), how many homologous hits support each, the best local fit RMSD (lower = better), and the source PDB entries. Use to hypothesize cofactor/metal/ligand/drug binding for a protein whose only structure is an AlphaFold model. No API key required.
Schema
JSON Schema the agent (or your API call) must match.
Examples (1)
Default AlphaFill Get Transplants call
Anonymous-safe example. Rate-limited; no sign-in required.
Identifiers
- Catalog ID
- tu_AlphaFill_get_transplants
- Tool name
- AlphaFill_get_transplants
- Added
- 2026-07-29 18:13Z
- Tags
- tooluniverse