Cortexa research tool·structure·bvbrc

BVBRC Search Protein Structures

Search for pathogen protein structures in BV-BRC by organism (taxon_id), gene name, or experimental method. Returns PDB entries with titles, resolution, methods, and references. Covers viral and bacterial protein structures linked to BV-BRC genome annotations. Example: search for all SARS-CoV-2 protein structures with taxon_id 2697049.

Livelast probed 2026-04-30 23:07Z· 100msCortexa

Status

The most recent probe succeeded. Safe to call from the agent today.

Last probed: 1d ago
Last success: 1d ago
Last latency: 100ms

Schema

JSON Schema the agent (or your API call) must match.

{
  "properties": {
    "gene": {
      "description": "Gene name filter. Examples: 'S' (spike), 'rep' (replicase), 'N' (nucleocapsid).",
      "type": [
        "string",
        "null"
      ]
    },
    "limit": {
      "description": "Maximum number of results. Default: 10. Max: 100.",
      "type": [
        "integer",
        "null"
      ]
    },
    "method": {
      "description": "Experimental method. Examples: 'X-ray diffraction', 'Electron microscopy', 'Solution NMR'.",
      "type": [
        "string",
        "null"
      ]
    },
    "taxon_id": {
      "description": "NCBI Taxonomy ID. Examples: '2697049' (SARS-CoV-2), '1773' (M. tuberculosis), '11320' (Influenza A).",
      "type": [
        "string",
        "null"
      ]
    }
  },
  "required": [],
  "type": "object"
}

Examples (1)

Default BVBRC Search Protein Structures call

public-safeinput

{}

Expected response keys: success

Anonymous-safe example. Rate-limited; no sign-in required.

Identifiers

Catalog ID: tu_BVBRC_search_protein_structures
Tool name: BVBRC_search_protein_structures
Added: 2026-04-30 22:47Z
Tags: tooluniverse

BVBRC Search Protein Structures

Livelast probed 2026-04-30 23:07Z· 100msCortexa

Schema

JSON Schema the agent (or your API call) must match.

{ "properties": { "gene": { "description": "Gene name filter. Examples: 'S' (spike), 'rep' (replicase), 'N' (nucleocapsid).", "type": [ "string", "null" ] }, "limit": { "description": "Maximum number of results. Default: 10. Max: 100.", "type": [ "integer", "null" ] }, "method": { "description": "Experimental method. Examples: 'X-ray diffraction', 'Electron microscopy', 'Solution NMR'.", "type": [ "string", "null" ] }, "taxon_id": { "description": "NCBI Taxonomy ID. Examples: '2697049' (SARS-CoV-2), '1773' (M. tuberculosis), '11320' (Influenza A).", "type": [ "string", "null" ] } }, "required": [], "type": "object" }