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Cortexa research tool·biomedical·cellxgene_census
CELLxGENE Download H5ad
Download original H5AD (HDF5-based AnnData) files from CELLxGENE datasets or get their URIs. Access unprocessed data from individual studies with complete metadata and analysis results. Requires dataset_id from CELLxGENE Discover. Note: Files can be large (GBs). Use for: accessing raw data, reproducibility, offline analysis, custom processing pipelines.
AvailableCortexa
Schema
JSON Schema the agent (or your API call) must match.
JSON · 30 lines · 831 chars
Examples (1)
Default CELLxGENE Download H5ad call
public-safeinput
JSON · 4 lines · 41 chars
Expected response keys: success
Anonymous-safe example. Rate-limited; no sign-in required.
Identifiers
- Catalog ID
- tu_CELLxGENE_download_h5ad
- Tool name
- CELLxGENE_download_h5ad
- Added
- 2026-05-01 00:58Z
- Tags
- tooluniverse