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Cortexa research tool·genomics·Genomics & Transcriptomics
CellMarker Search By Gene
Search the CellMarker 2.0 database for cell types that express a given marker gene. Returns curated cell type annotations from single-cell RNA-seq studies and experimental literature. CellMarker 2.0 covers >500 cell types across >400 tissue types in human and mouse. Use this to identify which cell types a gene marks, enabling cell type annotation in scRNA-seq analysis. Example: CD3D marks T cells, CD68 marks macrophages, EPCAM marks epithelial cells.
AvailableCortexa
Schema
JSON Schema the agent (or your API call) must match.
JSON · 32 lines · 751 chars
Examples (1)
Default CellMarker Search By Gene call
public-safeinput
JSON · 4 lines · 47 chars
Expected response keys: success
Anonymous-safe example. Rate-limited; no sign-in required.
Identifiers
- Catalog ID
- tu_CellMarker_search_by_gene
- Tool name
- CellMarker_search_by_gene
- Added
- 2026-04-30 22:47Z
- Tags
- tooluniverse