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Research tool·genomics·Genomics & Transcriptomics

CellMarker Search By Gene

Search the CellMarker 2.0 database for cell types that express a given marker gene. Returns curated cell type annotations from single-cell RNA-seq studies and experimental literature. CellMarker 2.0 covers >500 cell types across >400 tissue types in human and mouse. Use this to identify which cell types a gene marks, enabling cell type annotation in scRNA-seq analysis. Example: CD3D marks T cells, CD68 marks macrophages, EPCAM marks epithelial cells.

AvailableCortexa

Schema

JSON Schema the agent (or your API call) must match.

View JSON schemaExpandCollapse
JSON · 32 lines · 751 chars

Examples (1)

Default CellMarker Search By Gene call

Public-safe example · rate-limited

JSON input · 6 lines · 108 chars
Expected response keys: success

Identifiers

Catalog ID
tu_CellMarker_search_by_gene
Tool name
CellMarker_search_by_gene
Added
2026-04-30 22:47Z
Tags
tooluniverse
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