ChIPAtlas Get Colocalization
ChIP-Atlas Colocalization: for a given antigen/transcription factor in a specific tissue class, return the other proteins whose ChIP-seq peaks co-occur (co-bind) genome-wide, ranked by overlap score. Reveals protein complexes and co-regulators (e.g. CTCF in Blood co-binds the cohesin subunits RAD21, SMC1A, SMC3, STAG1 and ZNF143). Requires both an antigen and a cell-type/tissue class because the matrix is precomputed per antigen-per-tissue. To discover which tissue classes exist for an antigen,…
Overview
ChIP-Atlas Colocalization: for a given antigen/transcription factor in a specific tissue class, return the other proteins whose ChIP-seq peaks co-occur (co-bind) genome-wide, ranked by overlap score. Reveals protein complexes and co-regulators (e.g. CTCF in Blood co-binds the cohesin subunits RAD21, SMC1A, SMC3, STAG1 and ZNF143). Requires both an antigen and a cell-type/tissue class because the matrix is precomputed per antigen-per-tissue. To discover which tissue classes exist for an antigen, consult the index at https://chip-atlas.org/data/colo_analysis.json?genome=<genome>. Use for: identifying co-binding partners, inferring TF complexes, finding co-regulators of a factor in a tissue.
Schema
JSON Schema the agent (or your API call) must match.
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Examples (1)
Default ChIPAtlas Get Colocalization call
Public-safe example · rate-limited
Identifiers
- Catalog ID
- tu_ChIPAtlas_get_colocalization
- Tool name
- ChIPAtlas_get_colocalization
- Added
- 2026-07-29 18:13Z
- Tags
- tooluniverse