ChIPAtlas Get Target Genes
ChIP-Atlas Target Genes: for a transcription factor, return its ranked list of potential target genes - genes whose TSS-proximal region is bound by the TF - scored as the average binding strength across all ChIP-seq experiments for that TF. Choose the TSS-distance window with the 'distance' parameter (1, 5, or 10 kb). Use for: predicting which genes a TF regulates, building TF-target gene sets, prioritizing direct targets. To check which TFs have target-gene data for a genome, see https://chip-…
Overview
ChIP-Atlas Target Genes: for a transcription factor, return its ranked list of potential target genes - genes whose TSS-proximal region is bound by the TF - scored as the average binding strength across all ChIP-seq experiments for that TF. Choose the TSS-distance window with the 'distance' parameter (1, 5, or 10 kb). Use for: predicting which genes a TF regulates, building TF-target gene sets, prioritizing direct targets. To check which TFs have target-gene data for a genome, see https://chip-atlas.org/data/target_genes_analysis.json. Note: a few antigens (including CTCF on hg38) are served with a header but no scored rows; in that case the tool returns gene_count 0 with an explanatory note - pick another factor (e.g. 'GATA1').
Schema
JSON Schema the agent (or your API call) must match.
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Examples (1)
Default ChIPAtlas Get Target Genes call
Public-safe example · rate-limited
Identifiers
- Catalog ID
- tu_ChIPAtlas_get_target_genes
- Tool name
- ChIPAtlas_get_target_genes
- Added
- 2026-07-29 18:13Z
- Tags
- tooluniverse