Cortexa research tool·genomics·chipatlas

ChIPAtlas Search Datasets

Search ChIP-Atlas by antigen or cell type to find available datasets. Returns number of experiments and experiment IDs. Use antigenList for finding TF/histone datasets across cell types. Use celltypeList for finding all factors in specific cell type. Use for: dataset discovery, planning comparative analysis, checking data availability.

Livelast probed 2026-04-30 23:07Z· 102msCortexa

Status

The most recent probe succeeded. Safe to call from the agent today.

Last probed: 1d ago
Last success: 1d ago
Last latency: 102ms

Schema

JSON Schema the agent (or your API call) must match.

{
  "properties": {
    "antigen": {
      "description": "Search by antigen/protein name (e.g., 'CTCF', 'H3K27ac')",
      "type": "string"
    },
    "cell_type": {
      "description": "Search by cell type (e.g., 'K-562', 'HeLa', 'MCF-7')",
      "type": "string"
    },
    "genome": {
      "default": "hg38",
      "description": "Genome assembly",
      "enum": [
        "hg38",
        "hg19",
        "mm10",
        "mm9",
        "rn6",
        "dm6",
        "dm3",
        "ce11",
        "ce10",
        "sacCer3"
      ],
      "type": "string"
    },
    "operation": {
      "default": "search_datasets",
      "enum": [
        "search_datasets"
      ],
      "type": "string"
    }
  },
  "required": [],
  "type": "object"
}

Examples (1)

Default ChIPAtlas Search Datasets call

public-safeinput

{}

Expected response keys: success

Anonymous-safe example. Rate-limited; no sign-in required.

Identifiers

Catalog ID: tu_ChIPAtlas_search_datasets
Tool name: ChIPAtlas_search_datasets
Added: 2026-04-30 22:47Z
Tags: tooluniverse

ChIPAtlas Search Datasets

Livelast probed 2026-04-30 23:07Z· 102msCortexa

Schema

JSON Schema the agent (or your API call) must match.

{ "properties": { "antigen": { "description": "Search by antigen/protein name (e.g., 'CTCF', 'H3K27ac')", "type": "string" }, "cell_type": { "description": "Search by cell type (e.g., 'K-562', 'HeLa', 'MCF-7')", "type": "string" }, "genome": { "default": "hg38", "description": "Genome assembly", "enum": [ "hg38", "hg19", "mm10", "mm9", "rn6", "dm6", "dm3", "ce11", "ce10", "sacCer3" ], "type": "string" }, "operation": { "default": "search_datasets", "enum": [ "search_datasets" ], "type": "string" } }, "required": [], "type": "object" }