Cortexa research tool·structure·cryoet

CryoET List Annotations

List biological annotations (segmentations, point annotations, surface meshes) for a specific cryo-ET run from the CryoET Data Portal. Annotations label cellular structures such as membranes, ribosomes, and organelles. Returns object name (e.g. 'membrane', 'ribosome'), GO/EMDB ontology ID, annotation method description, count of annotated instances, software used, and metadata paths. Filter by `curator_recommended_only=true` to get curated high-quality annotations.

Livelast probed 2026-05-01 01:00Z· 174msCortexa

Status

The most recent probe succeeded. Safe to call from the agent today.

Last probed: 1d ago
Last success: 1d ago
Last latency: 174ms

Schema

JSON Schema the agent (or your API call) must match.

{
  "properties": {
    "curator_recommended_only": {
      "default": false,
      "description": "If true, return only curator-recommended high-quality annotations (default: false).",
      "type": "boolean"
    },
    "limit": {
      "default": 20,
      "description": "Maximum number of annotations to return (default: 20).",
      "type": "integer"
    },
    "offset": {
      "default": 0,
      "description": "Number of annotations to skip for pagination (default: 0).",
      "type": "integer"
    },
    "operation": {
      "default": "list_annotations",
      "description": "Operation type",
      "enum": [
        "list_annotations"
      ],
      "type": "string"
    },
    "run_id": {
      "description": "Numeric run ID (e.g. 3430). Obtain from CryoET_list_runs.",
      "type": "integer"
    }
  },
  "required": [
    "operation",
    "run_id"
  ],
  "type": "object"
}

Examples (1)

Default CryoET List Annotations call

public-safeinput

{
  "curator_recommended_only": false,
  "limit": 3,
  "offset": 1,
  "operation": "",
  "run_id": 1
}

Expected response keys: success

Anonymous-safe example. Rate-limited; no sign-in required.

Identifiers

Catalog ID: tu_CryoET_list_annotations
Tool name: CryoET_list_annotations
Added: 2026-05-01 00:58Z
Tags: tooluniverse

CryoET List Annotations

Livelast probed 2026-05-01 01:00Z· 174msCortexa

Schema

JSON Schema the agent (or your API call) must match.

{ "properties": { "curator_recommended_only": { "default": false, "description": "If true, return only curator-recommended high-quality annotations (default: false).", "type": "boolean" }, "limit": { "default": 20, "description": "Maximum number of annotations to return (default: 20).", "type": "integer" }, "offset": { "default": 0, "description": "Number of annotations to skip for pagination (default: 0).", "type": "integer" }, "operation": { "default": "list_annotations", "description": "Operation type", "enum": [ "list_annotations" ], "type": "string" }, "run_id": { "description": "Numeric run ID (e.g. 3430). Obtain from CryoET_list_runs.", "type": "integer" } }, "required": [ "operation", "run_id" ], "type": "object" }