CryoET List Datasets

Overview

Search and list cryo-electron tomography (cryo-ET) datasets from the CZ BioHub CryoET Data Portal (cryoetdataportal.czscience.com). Returns dataset metadata including title, description, organism, tissue/cell type, sample type, and S3/HTTPS data access paths. Supports filtering by organism name or tissue name. Use for: discovering available cryo-ET datasets, finding datasets by organism (e.g. 'Homo sapiens', 'Saccharomyces cerevisiae'), filtering by tissue or cell type. Returns up to `limit` datasets per call; use `offset` for pagination.

Status

The most recent probe succeeded. Safe to call from the agent today.

Last probed

1d ago

Last success

1d ago

Last latency

96ms

Schema

JSON Schema the agent (or your API call) must match.

{
  "properties": {
    "limit": {
      "default": 10,
      "description": "Maximum number of datasets to return (default: 10, max recommended: 50).",
      "type": "integer"
    },
    "offset": {
      "default": 0,
      "description": "Number of datasets to skip for pagination (default: 0).",
      "type": "integer"
    },
    "operation": {
      "default": "list_datasets",
      "description": "Operation type",
      "enum": [
        "list_datasets"
      ],
      "type": "string"
    },
    "organism_name": {
      "description": "Filter by organism name (case-insensitive substring match). Examples: 'Homo sapiens', 'Saccharomyces cerevisiae', 'Coxiella burnetii'.",
      "type": [
        "string",
        "null"
      ]
    },
    "tissue_name": {
      "description": "Filter by tissue or cell type name (case-insensitive substring match). Examples: 'kidney', 'endothelial', 'prokaryotic cell'.",
      "type": [
        "string",
        "null"
      ]
    }
  },
  "required": [
    "operation"
  ],
  "type": "object"
}

Examples (1)

{
  "limit": 3,
  "offset": 1,
  "operation": ""
}

Identifiers

Catalog ID

tu_CryoET_list_datasets

Tool name

CryoET_list_datasets

Added

2026-05-01 00:58Z

Tags

tooluniverse