Cortexa research tool·structure·cryoet

CryoET List Tomograms

List tomographic reconstructions for a specific experimental run from the CryoET Data Portal. Returns voxel spacing (Angstroms), tomogram dimensions (sizeX/Y/Z voxels), reconstruction method (WBP = Weighted Back Projection, SIRT, etc.), processing pipeline, and download URLs for OME-Zarr (cloud-native) and MRC (traditional) formats. Use after `CryoET_list_runs` to find tomograms; use `isPortalStandard` flag to identify quality-controlled tomograms.

Livelast probed 2026-05-01 01:00Z· 95msCortexa

Status

The most recent probe succeeded. Safe to call from the agent today.

Last probed: 1d ago
Last success: 1d ago
Last latency: 95ms

Schema

JSON Schema the agent (or your API call) must match.

{
  "properties": {
    "limit": {
      "default": 10,
      "description": "Maximum number of tomograms to return (default: 10).",
      "type": "integer"
    },
    "offset": {
      "default": 0,
      "description": "Number of tomograms to skip for pagination (default: 0).",
      "type": "integer"
    },
    "operation": {
      "default": "list_tomograms",
      "description": "Operation type",
      "enum": [
        "list_tomograms"
      ],
      "type": "string"
    },
    "run_id": {
      "description": "Numeric run ID (e.g. 3430). Obtain from CryoET_list_runs.",
      "type": "integer"
    }
  },
  "required": [
    "operation",
    "run_id"
  ],
  "type": "object"
}

Examples (1)

Default CryoET List Tomograms call

public-safeinput

{
  "limit": 3,
  "offset": 1,
  "operation": "",
  "run_id": 1
}

Expected response keys: success

Anonymous-safe example. Rate-limited; no sign-in required.

Identifiers

Catalog ID: tu_CryoET_list_tomograms
Tool name: CryoET_list_tomograms
Added: 2026-05-01 00:58Z
Tags: tooluniverse

CryoET List Tomograms

Livelast probed 2026-05-01 01:00Z· 95msCortexa

Schema

JSON Schema the agent (or your API call) must match.

{ "properties": { "limit": { "default": 10, "description": "Maximum number of tomograms to return (default: 10).", "type": "integer" }, "offset": { "default": 0, "description": "Number of tomograms to skip for pagination (default: 0).", "type": "integer" }, "operation": { "default": "list_tomograms", "description": "Operation type", "enum": [ "list_tomograms" ], "type": "string" }, "run_id": { "description": "Numeric run ID (e.g. 3430). Obtain from CryoET_list_runs.", "type": "integer" } }, "required": [ "operation", "run_id" ], "type": "object" }