EBIProteins Get Proteins By Genomic Loc
Reverse genome-to-protein coordinate lookup from the EBI Proteins API: given a genomic position (taxonomy + chromosome:position), return all UniProt proteins whose coding sequence overlaps that position, with exon-level mapping (accession, Ensembl gene/transcript/translation IDs, protein start/end residue, amino acid, chromosome, strand, assembly). Inverse of EBIProteins_get_coordinate_mapping. Use to find which proteins a chromosomal variant affects and at which residue. Example: taxonomy 9606…
Overview
Reverse genome-to-protein coordinate lookup from the EBI Proteins API: given a genomic position (taxonomy + chromosome:position), return all UniProt proteins whose coding sequence overlaps that position, with exon-level mapping (accession, Ensembl gene/transcript/translation IDs, protein start/end residue, amino acid, chromosome, strand, assembly). Inverse of EBIProteins_get_coordinate_mapping. Use to find which proteins a chromosomal variant affects and at which residue. Example: taxonomy 9606, location '17:7676154' returns 18 entries including TP53 (P04637) at protein residue 72 (Pro) on ENST00000923569.
Schema
JSON Schema the agent (or your API call) must match.
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Examples (1)
Default EBIProteins Get Proteins By Genomic Loc call
Public-safe example · rate-limited
Identifiers
- Catalog ID
- tu_EBIProteins_get_proteins_by_genomic_loc
- Tool name
- EBIProteins_get_proteins_by_genomic_loc
- Added
- 2026-07-29 18:13Z
- Tags
- tooluniverse