Cortexa research tool·structure·emdb

EMDB Get Structure

Get 3D electron microscopy (EM) structure data from the Electron Microscopy Data Bank (EMDB). Returns cryo-EM structure metadata including resolution (in Ångströms), imaging method, organism, molecule details, voxel dimensions, map download URLs, and cross-references to PDB entries. Use this for structural biology research, comparing protein conformations, drug design, and downloading electron density maps for visualization or model fitting.

Livelast probed 2026-04-30 23:07Z· 102msCortexa

Status

The most recent probe succeeded. Safe to call from the agent today.

Last probed: 1d ago
Last success: 1d ago
Last latency: 102ms

Schema

JSON Schema the agent (or your API call) must match.

{
  "properties": {
    "emdb_id": {
      "description": "EMDB structure identifier in format 'EMD-####' (e.g., 'EMD-1234', 'EMD-0001'). Find IDs via EMDB search or from publications.",
      "type": "string"
    }
  },
  "required": [
    "emdb_id"
  ],
  "type": "object"
}

Examples (1)

Default EMDB Get Structure call

public-safeinput

{
  "emdb_id": ""
}

Expected response keys: success

Anonymous-safe example. Rate-limited; no sign-in required.

Identifiers

Catalog ID: tu_EMDB_get_structure
Tool name: EMDB_get_structure
Added: 2026-04-30 22:47Z
Tags: tooluniverse

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