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Cortexa research tool·genomics·encode

ENCODE List Files

List ENCODE data files with filters by file format, output type, or assay. Returns file metadata including accessions, formats (FASTQ, BAM, bigWig), output types (alignments, peaks, signal), and file sizes. Use this to programmatically discover downloadable artifacts for specific experiments or data types. Find file accessions to use with ENCODE_get_file for detailed file information and download URLs.

AvailableCortexa

Schema

JSON Schema the agent (or your API call) must match.

JSON · 20 lines · 628 chars

Examples (1)

Default ENCODE List Files call

public-safeinput
JSON · 3 lines · 16 chars
Expected response keys: success

Anonymous-safe example. Rate-limited; no sign-in required.

Identifiers

Catalog ID
tu_ENCODE_list_files
Tool name
ENCODE_list_files
Added
2026-05-01 00:58Z
Tags
tooluniverse
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