Cortexa research tool·structure·epigenomics

ENCODE Search Hic Experiments

Search ENCODE Hi-C and intact Hi-C experiments for 3D genome organization data. Hi-C captures chromatin interactions genome-wide, revealing topologically associating domains (TADs), chromatin loops, and A/B compartments. Returns experiment accessions, biosample details, and metadata. Use this to find 3D genome structure data for specific cell types or tissues. Intact Hi-C is the newer protocol with improved resolution.

Livelast probed 2026-05-01 01:00Z· 379msCortexa

Status

The most recent probe succeeded. Safe to call from the agent today.

Last probed: 1d ago
Last success: 1d ago
Last latency: 379ms

Schema

JSON Schema the agent (or your API call) must match.

{
  "properties": {
    "assay_type": {
      "default": "intact Hi-C",
      "description": "Hi-C assay type: 'intact Hi-C' (newer protocol, better resolution) or 'Hi-C' (original protocol). Default is 'intact Hi-C'.",
      "type": "string"
    },
    "biosample_term_name": {
      "description": "Biosample name filter (e.g., 'K562', 'GM12878', 'H1'). Leave empty for all.",
      "type": [
        "string",
        "null"
      ]
    },
    "limit": {
      "default": 25,
      "description": "Maximum number of results to return.",
      "maximum": 100,
      "minimum": 1,
      "type": "integer"
    },
    "organism": {
      "default": "Homo sapiens",
      "description": "Organism scientific name (e.g., 'Homo sapiens', 'Mus musculus').",
      "type": "string"
    }
  },
  "type": "object"
}

Examples (1)

Default ENCODE Search Hic Experiments call

public-safeinput

{
  "limit": 3
}

Expected response keys: success

Anonymous-safe example. Rate-limited; no sign-in required.

Identifiers

Catalog ID: tu_ENCODE_search_hic_experiments
Tool name: ENCODE_search_hic_experiments
Added: 2026-05-01 00:58Z
Tags: tooluniverse

ENCODE Search Hic Experiments

Livelast probed 2026-05-01 01:00Z· 379msCortexa

Schema

JSON Schema the agent (or your API call) must match.

{ "properties": { "assay_type": { "default": "intact Hi-C", "description": "Hi-C assay type: 'intact Hi-C' (newer protocol, better resolution) or 'Hi-C' (original protocol). Default is 'intact Hi-C'.", "type": "string" }, "biosample_term_name": { "description": "Biosample name filter (e.g., 'K562', 'GM12878', 'H1'). Leave empty for all.", "type": [ "string", "null" ] }, "limit": { "default": 25, "description": "Maximum number of results to return.", "maximum": 100, "minimum": 1, "type": "integer" }, "organism": { "default": "Homo sapiens", "description": "Organism scientific name (e.g., 'Homo sapiens', 'Mus musculus').", "type": "string" } }, "type": "object" }