EnsemblLD Get Ld Region
Get region-wide pairwise linkage disequilibrium (LD) from the Ensembl REST API: every r-squared and D' pair among ALL variants inside a chromosomal window for one 1000 Genomes Phase 3 population. This is the LD matrix used as input to statistical fine-mapping (e.g. SuSiE, FINEMAP) and LD-aware clumping at a GWAS locus. The window must be <= 1 Mb (Ensembl limit). Region format: 'chr:start..end'. Example: region '6:25837556..25840000' in CEU returns 4 LD pairs, e.g. rs62394274/rs62394275 with r2=…
Overview
Get region-wide pairwise linkage disequilibrium (LD) from the Ensembl REST API: every r-squared and D' pair among ALL variants inside a chromosomal window for one 1000 Genomes Phase 3 population. This is the LD matrix used as input to statistical fine-mapping (e.g. SuSiE, FINEMAP) and LD-aware clumping at a GWAS locus. The window must be <= 1 Mb (Ensembl limit). Region format: 'chr:start..end'. Example: region '6:25837556..25840000' in CEU returns 4 LD pairs, e.g. rs62394274/rs62394275 with r2=1.0 and d_prime=1.0.
Schema
JSON Schema the agent (or your API call) must match.
Examples (1)
Default EnsemblLD Get Ld Region call
Anonymous-safe example. Rate-limited; no sign-in required.
Identifiers
- Catalog ID
- tu_EnsemblLD_get_ld_region
- Tool name
- EnsemblLD_get_ld_region
- Added
- 2026-07-29 18:13Z
- Tags
- tooluniverse