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Cortexa research tool·genomics·ensembl_regulation
EnsemblReg Get Binding Matrix
Get a transcription factor binding matrix (position weight matrix/PWM) by stable ID from the Ensembl REST API. Returns the nucleotide frequency matrix, threshold, associated TF complexes, and consensus sequence. Binding matrices describe the DNA sequence preferences of transcription factors and are essential for predicting TF binding sites and understanding gene regulation. Example: ENSPFM0320 returns the PAX5 binding matrix with 18 positions.
AvailableCortexa
Schema
JSON Schema the agent (or your API call) must match.
JSON · 17 lines · 473 chars
Examples (1)
Default EnsemblReg Get Binding Matrix call
public-safeinput
JSON · 3 lines · 29 chars
Expected response keys: success
Anonymous-safe example. Rate-limited; no sign-in required.
Identifiers
- Catalog ID
- tu_EnsemblReg_get_binding_matrix
- Tool name
- EnsemblReg_get_binding_matrix
- Added
- 2026-04-30 22:47Z
- Tags
- tooluniverse