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Cortexa research tool·genomics·ensembl_regulation

EnsemblReg Get Binding Matrix

Get a transcription factor binding matrix (position weight matrix/PWM) by stable ID from the Ensembl REST API. Returns the nucleotide frequency matrix, threshold, associated TF complexes, and consensus sequence. Binding matrices describe the DNA sequence preferences of transcription factors and are essential for predicting TF binding sites and understanding gene regulation. Example: ENSPFM0320 returns the PAX5 binding matrix with 18 positions.

AvailableCortexa

Schema

JSON Schema the agent (or your API call) must match.

JSON · 17 lines · 473 chars

Examples (1)

Default EnsemblReg Get Binding Matrix call

public-safeinput
JSON · 3 lines · 29 chars
Expected response keys: success

Anonymous-safe example. Rate-limited; no sign-in required.

Identifiers

Catalog ID
tu_EnsemblReg_get_binding_matrix
Tool name
EnsemblReg_get_binding_matrix
Added
2026-04-30 22:47Z
Tags
tooluniverse
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