Ensembl Get Transcript Haplotypes
Get population protein and CDS haplotypes for a transcript from the Ensembl REST API (transcript_haplotypes endpoint). Returns the real observed haplotypes across 1000 Genomes phase 3 populations, each with per-population frequencies, contributing variants, sequence diffs, an indel flag, and observed counts/frequency, plus total_population_counts and total_haplotype_count. Use this to assess how a coding transcript varies across human populations. Example: ENST00000288602 (BRAF) returns 11 prot…
Overview
Get population protein and CDS haplotypes for a transcript from the Ensembl REST API (transcript_haplotypes endpoint). Returns the real observed haplotypes across 1000 Genomes phase 3 populations, each with per-population frequencies, contributing variants, sequence diffs, an indel flag, and observed counts/frequency, plus total_population_counts and total_haplotype_count. Use this to assess how a coding transcript varies across human populations. Example: ENST00000288602 (BRAF) returns 11 protein_haplotypes and 26 cds_haplotypes; the most common protein haplotype has 1000GENOMES:phase_3 population frequencies up to ~0.99.
Schema
JSON Schema the agent (or your API call) must match.
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Examples (1)
Default Ensembl Get Transcript Haplotypes call
Public-safe example · rate-limited
Identifiers
- Catalog ID
- tu_Ensembl_get_transcript_haplotypes
- Tool name
- Ensembl_get_transcript_haplotypes
- Added
- 2026-07-29 18:13Z
- Tags
- tooluniverse