FlyMine Search

Overview

Search FlyMine, the InterMine data warehouse for Drosophila melanogaster (fruit fly) genomics data from FlyBase. Searches across genes, proteins, publications, protein domains, gene ontology terms, and more. FlyMine integrates data from FlyBase, UniProt, Reactome, KEGG, TreeFam, and other model organism databases. Returns matching records with category facets and relevance scores. Use facet_Category parameter to filter by entity type (e.g., 'Gene', 'Protein', 'Publication', 'ProteinDomain', 'CDNAClone', 'GOTerm', 'InteractionExperiment').

Status

The most recent probe succeeded. Safe to call from the agent today.

Last probed

1d ago

Last success

1d ago

Last latency

2057ms

Schema

JSON Schema the agent (or your API call) must match.

{
  "properties": {
    "facet_Category": {
      "description": "Filter by entity category. Options: 'Gene', 'Protein', 'Publication', 'ProteinDomain', 'CDNAClone', 'GOTerm', 'InteractionExperiment', 'RNAiScreen', 'UniProtFeature'.",
      "type": "string"
    },
    "format": {
      "default": "json",
      "description": "Response format. Must be 'json'.",
      "type": "string"
    },
    "q": {
      "description": "Search query: gene symbol (e.g., 'dpp', 'Notch', 'hedgehog'), protein name, domain name, or free text.",
      "type": "string"
    },
    "size": {
      "default": 10,
      "description": "Number of results to return (default: 10, max: 100).",
      "type": "integer"
    }
  },
  "required": [
    "q"
  ],
  "type": "object"
}

Examples (1)

{
  "q": "",
  "size": 1
}

Identifiers

Catalog ID

tu_FlyMine_search

Tool name

FlyMine_search

Added

2026-05-01 00:58Z

Tags

tooluniverse