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Cortexa research tool·structure·foldseek

Foldseek Search Structure

Search for structurally similar proteins using Foldseek. Given a PDB ID, downloads the structure from RCSB and searches against AlphaFold DB (afdb50), PDB100, or other structure databases. Returns structural alignments ranked by e-value. This is an async operation that submits a job and polls for results (typically 10-60 seconds). Example: pdb_id='4HHB' finds proteins with similar 3D fold to hemoglobin.

AvailableCortexa

Schema

JSON Schema the agent (or your API call) must match.

JSON · 33 lines · 1,227 chars

Examples (1)

Default Foldseek Search Structure call

input
JSON · 5 lines · 62 chars
Expected response keys: success

Identifiers

Catalog ID
tu_Foldseek_search_structure
Tool name
Foldseek_search_structure
Added
2026-04-30 22:47Z
Tags
tooluniverse, slow
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