Cortexa research tool·clinical·gmrepo

GMrepo Search Species

Search the GMrepo database for gut microbiome species by name. Returns species with NCBI taxon IDs, sample counts, prevalence across conditions, and number of associated phenotypes. GMrepo is a curated human gut microbiome repository with data from 96,000+ samples across 350+ phenotypes. Use this to find specific bacteria and their prevalence in human gut studies.

Livelast probed 2026-04-30 23:07Z· 113msCortexa

Status

The most recent probe succeeded. Safe to call from the agent today.

Last probed: 1d ago
Last success: 1d ago
Last latency: 113ms

Schema

JSON Schema the agent (or your API call) must match.

{
  "properties": {
    "limit": {
      "default": 20,
      "description": "Maximum number of results to return. Default: 20.",
      "type": "integer"
    },
    "query": {
      "description": "Species name or partial name to search. Examples: 'Akkermansia', 'Bacteroides', 'Lactobacillus', 'Faecalibacterium prausnitzii', 'Bifidobacterium'.",
      "type": "string"
    }
  },
  "required": [
    "query"
  ],
  "type": "object"
}

Examples (1)

Default GMrepo Search Species call

public-safeinput

{
  "limit": 3,
  "query": "BRCA1"
}

Expected response keys: success

Anonymous-safe example. Rate-limited; no sign-in required.

Identifiers

Catalog ID: tu_GMrepo_search_species
Tool name: GMrepo_search_species
Added: 2026-04-30 22:47Z
Tags: tooluniverse

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