Cortexa research tool·biomedical·gtdb

GTDB Search Genomes

Search for prokaryotic genomes in GTDB by organism name. Returns genome accessions with both NCBI and GTDB taxonomy classifications, allowing comparison between the two taxonomic systems. Each result shows the genome accession (GCA/GCF), NCBI organism name, NCBI taxonomy, GTDB taxonomy, and whether the genome is a GTDB species representative. Supports pagination. Useful for finding genome accessions, exploring taxonomic reclassifications, and linking genomes to the GTDB taxonomy.

Livelast probed 2026-04-30 23:07Z· 121msCortexa

Status

The most recent probe succeeded. Safe to call from the agent today.

Last probed: 1d ago
Last success: 1d ago
Last latency: 121ms

Schema

JSON Schema the agent (or your API call) must match.

{
  "properties": {
    "items_per_page": {
      "description": "Number of results per page (default: 10, max: 50)",
      "type": "integer"
    },
    "operation": {
      "description": "Operation type (fixed: search_genomes)",
      "enum": [
        "search_genomes"
      ],
      "type": "string"
    },
    "page": {
      "description": "Page number for pagination (default: 1)",
      "type": "integer"
    },
    "query": {
      "description": "Search query for organism name (e.g., 'Escherichia', 'Staphylococcus aureus', 'Lactobacillus')",
      "type": "string"
    }
  },
  "required": [
    "operation",
    "query"
  ],
  "type": "object"
}

Examples (1)

Default GTDB Search Genomes call

public-safeinput

{
  "items_per_page": 1,
  "operation": "",
  "page": 1,
  "query": "BRCA1"
}

Expected response keys: success

Anonymous-safe example. Rate-limited; no sign-in required.

Identifiers

Catalog ID: tu_GTDB_search_genomes
Tool name: GTDB_search_genomes
Added: 2026-04-30 22:47Z
Tags: tooluniverse

GTDB Search Genomes

Livelast probed 2026-04-30 23:07Z· 121msCortexa

Schema

JSON Schema the agent (or your API call) must match.

{ "properties": { "items_per_page": { "description": "Number of results per page (default: 10, max: 50)", "type": "integer" }, "operation": { "description": "Operation type (fixed: search_genomes)", "enum": [ "search_genomes" ], "type": "string" }, "page": { "description": "Page number for pagination (default: 1)", "type": "integer" }, "query": { "description": "Search query for organism name (e.g., 'Escherichia', 'Staphylococcus aureus', 'Lactobacillus')", "type": "string" } }, "required": [ "operation", "query" ], "type": "object" }