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Cortexa research tool·biomedical·gtdb
GTDB Search Genomes
Search for prokaryotic genomes in GTDB by organism name. Returns genome accessions with both NCBI and GTDB taxonomy classifications, allowing comparison between the two taxonomic systems. Each result shows the genome accession (GCA/GCF), NCBI organism name, NCBI taxonomy, GTDB taxonomy, and whether the genome is a GTDB species representative. Supports pagination. Useful for finding genome accessions, exploring taxonomic reclassifications, and linking genomes to the GTDB taxonomy.
AvailableCortexa
Schema
JSON Schema the agent (or your API call) must match.
JSON · 28 lines · 658 chars
Examples (1)
Default GTDB Search Genomes call
public-safeinput
JSON · 6 lines · 77 chars
Expected response keys: success
Anonymous-safe example. Rate-limited; no sign-in required.
Identifiers
- Catalog ID
- tu_GTDB_search_genomes
- Tool name
- GTDB_search_genomes
- Added
- 2026-04-30 22:47Z
- Tags
- tooluniverse