Cortexa research tool·genomics·genenetwork

GeneNetwork Get Sample Data

Get expression or phenotype values for a specific gene/trait across all samples in a GeneNetwork dataset. Returns measurement values with standard errors for each inbred strain or individual in the genetic cross. Use this to find how a gene's expression varies across strains, identify strain differences, or get data for QTL analysis. Dataset abbreviation and trait/probe ID must match the dataset.

Livelast probed 2026-04-30 23:07Z· 103msCortexa

Status

The most recent probe succeeded. Safe to call from the agent today.

Last probed: 1d ago
Last success: 1d ago
Last latency: 103ms

Schema

JSON Schema the agent (or your API call) must match.

{
  "properties": {
    "dataset_name": {
      "description": "Dataset long abbreviation (e.g., 'HC_M2_0606_P' for BXD hippocampus, 'BXDPublish' for phenotypes). Obtain from GeneNetwork_list_datasets Long_Abbreviation field.",
      "type": "string"
    },
    "trait_name": {
      "description": "Probe/trait identifier within the dataset (e.g., '1436869_at' for a microarray probe, '10001' for a BXD phenotype trait). Must exist in the specified dataset.",
      "type": "string"
    }
  },
  "required": [
    "dataset_name",
    "trait_name"
  ],
  "type": "object"
}

Examples (1)

Default GeneNetwork Get Sample Data call

public-safeinput

{
  "dataset_name": "",
  "trait_name": "type 2 diabetes"
}

Expected response keys: success

Anonymous-safe example. Rate-limited; no sign-in required.

Identifiers

Catalog ID: tu_GeneNetwork_get_sample_data
Tool name: GeneNetwork_get_sample_data
Added: 2026-04-30 22:47Z
Tags: tooluniverse

GeneNetwork Get Sample Data

Livelast probed 2026-04-30 23:07Z· 103msCortexa

Schema

JSON Schema the agent (or your API call) must match.

{ "properties": { "dataset_name": { "description": "Dataset long abbreviation (e.g., 'HC_M2_0606_P' for BXD hippocampus, 'BXDPublish' for phenotypes). Obtain from GeneNetwork_list_datasets Long_Abbreviation field.", "type": "string" }, "trait_name": { "description": "Probe/trait identifier within the dataset (e.g., '1436869_at' for a microarray probe, '10001' for a BXD phenotype trait). Must exist in the specified dataset.", "type": "string" } }, "required": [ "dataset_name", "trait_name" ], "type": "object" }