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Cortexa research tool·structure·genome_nexus

GenomeNexus Get Canonical Transcript

Get the canonical transcript for a gene from Genome Nexus (MSK). Returns the Ensembl transcript ID, protein ID, protein length, RefSeq mRNA ID, CCDS ID, HUGO symbol, and Pfam protein domain annotations. Useful for determining the standard transcript to use for variant annotation, and for getting a quick overview of protein domain architecture. Input is a HUGO gene symbol (e.g., 'TP53', 'BRAF', 'BRCA1').

AvailableCortexa

Schema

JSON Schema the agent (or your API call) must match.

JSON · 12 lines · 227 chars

Examples (1)

Default GenomeNexus Get Canonical Transcript call

public-safeinput
JSON · 3 lines · 28 chars
Expected response keys: success

Anonymous-safe example. Rate-limited; no sign-in required.

Identifiers

Catalog ID
tu_GenomeNexus_get_canonical_transcript
Tool name
GenomeNexus_get_canonical_transcript
Added
2026-04-30 22:47Z
Tags
tooluniverse
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