Cortexa research tool·genomics·hocomoco

HOCOMOCO Get Motif

Get detailed information about a specific HOCOMOCO transcription factor binding motif. Returns gene names, UniProt IDs, TF classification, quality metrics, consensus sequence, and optionally the position weight matrix (PWM). Quality grades: A (best), B, C, D (lowest). Data sources: P (ChIP-Seq peaks), S (HT-SELEX). Example: 'P53.H14CORE.0.P.B' returns TP53 motif details.

Livelast probed 2026-05-01 01:00Z· 96msCortexa

Status

The most recent probe succeeded. Safe to call from the agent today.

Last probed: 1d ago
Last success: 1d ago
Last latency: 96ms

Schema

JSON Schema the agent (or your API call) must match.

{
  "properties": {
    "include_pwm": {
      "default": false,
      "description": "Whether to include the position weight matrix (PWM) in the response. Default: false.",
      "type": "boolean"
    },
    "motif_id": {
      "description": "HOCOMOCO motif identifier. Format: GENE.COLLECTION.SUBTYPE.SOURCE.QUALITY. Examples: 'P53.H14CORE.0.P.B', 'CTCF.H14CORE.0.P.B', 'STAT3.H14CORE.0.P.B'.",
      "type": "string"
    }
  },
  "required": [
    "motif_id"
  ],
  "type": "object"
}

Examples (1)

Default HOCOMOCO Get Motif call

public-safeinput

{
  "include_pwm": false,
  "motif_id": ""
}

Expected response keys: success

Anonymous-safe example. Rate-limited; no sign-in required.

Identifiers

Catalog ID: tu_HOCOMOCO_get_motif
Tool name: HOCOMOCO_get_motif
Added: 2026-05-01 00:58Z
Tags: tooluniverse

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