Cortexa research tool·biomedical·harmonizome

Harmonizome Get Dataset

Get detailed information about a specific dataset integrated in Harmonizome (Ma'ayan Lab). Returns the dataset description, association type, measurement method, attribute type, PubMed references, and a catalog of gene sets within the dataset. Use Harmonizome_list_datasets first to find available dataset names. Example: 'CTD Gene-Disease Associations' returns 5218 gene sets with curated disease-gene associations.

Livelast probed 2026-05-01 01:00Z· 101msCortexa

Status

The most recent probe succeeded. Safe to call from the agent today.

Last probed: 1d ago
Last success: 1d ago
Last latency: 101ms

Schema

JSON Schema the agent (or your API call) must match.

{
  "properties": {
    "dataset_name": {
      "description": "Exact dataset name from Harmonizome. Examples: 'CTD Gene-Disease Associations', 'KEGG Pathways', 'BioGRID Protein-Protein Interactions'. Use Harmonizome_list_datasets to find names.",
      "type": "string"
    },
    "gene_set_limit": {
      "description": "Maximum number of gene set names to return (default: 50).",
      "type": "integer"
    }
  },
  "required": [
    "dataset_name"
  ],
  "type": "object"
}

Examples (1)

Default Harmonizome Get Dataset call

public-safeinput

{
  "dataset_name": "",
  "gene_set_limit": 3
}

Expected response keys: success

Anonymous-safe example. Rate-limited; no sign-in required.

Identifiers

Catalog ID: tu_Harmonizome_get_dataset
Tool name: Harmonizome_get_dataset
Added: 2026-05-01 00:58Z
Tags: tooluniverse

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