Cortexa research tool·genomics·harmonizome

Harmonizome Search

Search Harmonizome across genes, datasets, or attributes by keyword. For gene search, returns matching gene symbols with names and NCBI IDs via exact lookup and suggest API. For dataset search, filters the 100+ dataset catalog by keyword. For attribute search, returns auto-complete suggestions. Use entity_type to control what is searched.

Livelast probed 2026-04-30 23:07Z· 89msCortexa

Status

The most recent probe succeeded. Safe to call from the agent today.

Last probed: 1d ago
Last success: 1d ago
Last latency: 89ms

Schema

JSON Schema the agent (or your API call) must match.

{
  "properties": {
    "entity_type": {
      "description": "What to search for: 'gene' (default), 'dataset', or 'attribute'.",
      "type": "string"
    },
    "limit": {
      "description": "Maximum results to return (default: 20).",
      "type": "integer"
    },
    "query": {
      "description": "Search query. Examples: 'TP53', 'BRCA1', 'kinase', 'expression', 'pathway'.",
      "type": "string"
    }
  },
  "required": [
    "query"
  ],
  "type": "object"
}

Examples (1)

Default Harmonizome Search call

public-safeinput

{
  "limit": 3,
  "query": "BRCA1"
}

Expected response keys: success

Anonymous-safe example. Rate-limited; no sign-in required.

Identifiers

Catalog ID: tu_Harmonizome_search
Tool name: Harmonizome_search
Added: 2026-04-30 22:47Z
Tags: tooluniverse

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