HuBMAP Get Dataset Provenance
Retrieve a HuBMAP dataset's biological provenance lineage: the ordered chain of ancestor entities from which the dataset was derived. The lineage runs Dataset -> Sample(s) (anatomical granularity section -> block -> organ) -> Donor, each entry giving entity_type, hubmap_id, uuid, sample_category, organ, and dataset_type. This answers 'which donor, organ, and tissue blocks/sections produced this dataset?'. Provide the dataset UUID (32-char hex) or HuBMAP ID; obtain these from HuBMAP_search_datas…
Overview
Retrieve a HuBMAP dataset's biological provenance lineage: the ordered chain of ancestor entities from which the dataset was derived. The lineage runs Dataset -> Sample(s) (anatomical granularity section -> block -> organ) -> Donor, each entry giving entity_type, hubmap_id, uuid, sample_category, organ, and dataset_type. This answers 'which donor, organ, and tissue blocks/sections produced this dataset?'. Provide the dataset UUID (32-char hex) or HuBMAP ID; obtain these from HuBMAP_search_datasets or HuBMAP_get_dataset. Example: uuid b1ca0a28b39e5ee6a252403e03247db6 returns 5 ancestors: Dataset HBM386.RVHN.555, Sample HBM522.MQPX.944 (section), Sample HBM364.WDPC.959 (block), Sample HBM865.MWHF.489 (organ, LK), Donor HBM758.JRSC.348.
Schema
JSON Schema the agent (or your API call) must match.
Examples (1)
Default HuBMAP Get Dataset Provenance call
Anonymous-safe example. Rate-limited; no sign-in required.
Identifiers
- Catalog ID
- tu_HuBMAP_get_dataset_provenance
- Tool name
- HuBMAP_get_dataset_provenance
- Added
- 2026-07-29 18:13Z
- Tags
- tooluniverse